Upload Local Fastq Files

Geneyx Analysis simplifies the process of implementing a secondary pipeline for converting fastq files to vcf (variant call format) through its user-friendly interface, eliminating the need for command line expertise. This feature is available as part of the licensed package, and if you wish to add it to your license, you can send an email request to support@geneyx.com.

In addition to its pipeline capabilities, Geneyx Analysis offers the convenience of automatically retrieving fastq files from a cloud infrastructure, known as the 3.10.6 Data Sources. This enables seamless integration with cloud-based storage solutions for effortless batch uploads. You can find detailed information on this feature in the platform’s documentation.

For the purpose of explaining the process of importing a single sample from a local directory, follow these steps:

1. Hover over the “Seq. Samples” section, and a menu will appear.

2. Navigate to the Data Management view within Geneyx Analysis.

3. Select “Upload Single Sample” from the menu.

By choosing this option, you can initiate the upload process for fastq files associated with a single sample. Geneyx Analysis provides a straightforward and streamlined experience for importing and managing your sequencing data, empowering you to effortlessly analyze genetic variants with ease and efficiency.